Bob Eisenberg: search on Z-Library

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1

A parallel finite element simulator for ion transport through three-dimensional ion channel systems

Tu, Bin, Chen, Minxin, Xie, Yan, Zhang, Linbo, Eisenberg, Bob, Lu, Benzhuo

Journal:

Journal of Computational Chemistry

Year:

2013

Language:

english

File:

PDF, 1.27 MB

english, 2013

2

Monte Carlo Simulation of Free Energy Components: Energetics of Selective Binding in a Reduced Model of L-Type Ca Channels

Giri, Janhavi, Eisenberg, Bob, Gillespie, Dirk, Henderson, Douglas, Boda, Dezső

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 80 KB

english, 2010

3

The Private Side of Conservation

David S. Wilcove, Michael J. Bean, Bob Long, William J. Snape III, Bruce M. Beehler and Jeff Eisenberg

Journal:

Frontiers in Ecology and the Environment

Year:

2004

Language:

english

File:

PDF, 5.89 MB

english, 2004

4

Asking biological questions of physical systems: The device approach to emergent properties

Journal:

Journal of Molecular Liquids

Year:

2018

Language:

english

File:

PDF, 944 KB

english, 2018

5

Ionic channels: natural nanotubes described by the drift diffusion equations

Journal:

Superlattices and Microstructures

Year:

2000

Language:

english

File:

PDF, 64 KB

english, 2000

6

Mass action in ionic solutions

Journal:

Chemical Physics Letters

Year:

2011

Language:

english

File:

PDF, 243 KB

english, 2011

7

Electrodiffusion in ionic channels of biological membranes

Wolfgang Nonner, Bob Eisenberg

Journal:

Journal of Molecular Liquids

Year:

2000

Language:

english

File:

PDF, 509 KB

english, 2000

8

Proteins, channels and crowded ions

Journal:

Biophysical Chemistry

Year:

2003

Language:

english

File:

PDF, 120 KB

english, 2003

9

Erratum to ‘‘Proteins, channels and crowded ions’’: [Biophys. Chem. 100 (2003) 507–517]

Journal:

Biophysical Chemistry

Year:

2003

Language:

english

File:

PDF, 32 KB

english, 2003

10

Ion channels allow atomic control of macroscopic transport

Journal:

physica status solidi (c)

Year:

2008

Language:

english

File:

PDF, 164 KB

english, 2008

11

Conductance and selectivity fluctuations in D127 mutants of the bacterial porin OmpF

Henk Miedema, Maarten Vrouenraets, Jenny Wierenga, Bob Eisenberg, Tilman Schirmer, Arnaud Baslé, Wim Meijberg

Journal:

European Biophysics Journal

Year:

2006

Language:

english

File:

PDF, 482 KB

english, 2006

12

Selectivity sequences in a model calcium channel: role of electrostatic field strength

Daniel Krauss, Bob Eisenberg, Dirk Gillespie

Journal:

European Biophysics Journal

Year:

2011

Language:

english

File:

PDF, 356 KB

english, 2011

13

Single-channel measurements of anN-acetylneuraminic acid-inducible outer membrane channel inEscherichia coli

Janhavi Giri, John M. Tang, Christophe Wirth, Caroline M. Peneff, Bob Eisenberg

Journal:

European Biophysics Journal

Year:

2012

Language:

english

File:

PDF, 975 KB

english, 2012

14

Shockley-Ramo theorem measures conformation changes of ion channels and proteins

Bob Eisenberg, Wolfgang Nonner

Journal:

Journal of Computational Electronics

Year:

2007

Language:

english

File:

PDF, 202 KB

english, 2007

15

Ionic Channels as Natural Nanodevices

Journal:

Journal of Computational Electronics

Year:

2002

Language:

english

File:

PDF, 32 KB

english, 2002

16

Ion Channels as Devices

Journal:

Journal of Computational Electronics

Year:

2003

Language:

english

File:

PDF, 50 KB

english, 2003

17

Ionizable side chains at catalytic active sites of enzymes

David Jimenez-Morales, Jie Liang, Bob Eisenberg

Journal:

European Biophysics Journal

Year:

2012

Language:

english

File:

PDF, 605 KB

english, 2012

18

Ionic channels in biological membranes- electrostatic analysis of a natural nanotube

Journal:

Contemporary Physics

Year:

1998

Language:

english

File:

PDF, 576 KB

english, 1998

19

Protein structure and ionic selectivity in calcium channels: Selectivity filter size, not shape, matters

Attila Malasics, Dirk Gillespie, Wolfgang Nonner, Douglas Henderson, Bob Eisenberg, Dezső Boda

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2009

Language:

english

File:

PDF, 1.91 MB

english, 2009

20

Poisson–Nernst–Planck Systems for Ion Channels with Permanent Charges

Eisenberg, Bob, Liu, Weishi

Journal:

SIAM Journal on Mathematical Analysis

Year:

2007

Language:

english

File:

PDF, 357 KB

english, 2007

21

Binding and Selectivity in L-Type Calcium Channels:A Mean Spherical Approximation

Nonner, Wolfgang, Catacuzzeno, Luigi, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 410 KB

english, 2000

22

Why Can’t Protons Move through Water Channels?

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 59 KB

english, 2003

23

Ions and Inhibitors in the Binding Site of HIV Protease: Comparison of Monte Carlo Simulations and the Linearized Poisson-Boltzmann Theory

Boda, Dezső, Valiskó, Mónika, Henderson, Douglas, Gillespie, Dirk, Eisenberg, Bob, Gilson, Michael K.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 1.26 MB

english, 2009

24

Conductance and Concentration Relationship in a Reduced Model of the K Channel

Fonseca, James E., Boda, Dezso, Nonner, Wolfgang, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010

25

A novel Brownian-Dynamics Algorithm for the Simulation of Ion Conduction Through Membrane Pores

Berti, Claudio, Gillespie, Dirk, Eisenberg, Bob, Furini, Simone, Fiegna, Claudio

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

26

Brownian Dynamics Simulation of Calcium Channels

Berti, Claudio, Furini, Simone, Gillespie, Dirk, Boda, Dezsö, Eisenberg, Bob, Fiegna, Claudio

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 32 KB

english, 2012

27

Ion Permeation and Glutamate Residues Linked by Poisson-Nernst-Planck Theory in L-Type Calcium Channels

Nonner, Wolfgang, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

1998

Language:

english

File:

PDF, 540 KB

english, 1998

28

Anomalous Mole Fraction Effect, Electrostatics, and Binding in Ionic Channels

Nonner, Wolfgang, Chen, Duan P., Eisenberg, Bob

Journal:

Biophysical Journal

Year:

1998

Language:

english

File:

PDF, 274 KB

english, 1998

29

Selectivity and Permeation in Calcium Release Channel of Cardiac Muscle: Alkali Metal Ions

Chen, Duan P., Xu, Le, Tripathy, Ashutosh, Meissner, Gerhard, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 292 KB

english, 1999

30

Relating Microscopic Charge Movement to Macroscopic Currents: The Ramo-Shockley Theorem Applied to Ion Channels

Nonner, Wolfgang, Peyser, Alexander, Gillespie, Dirk, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 177 KB

english, 2004

31

Ca2+ Selectivity of a Chemically Modified OmpF with Reduced Pore Volume

Miedema, Henk, Vrouenraets, Maarten, Wierenga, Jenny, Gillespie, Dirk, Eisenberg, Bob, Meijberg, Wim, Nonner, Wolfgang

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 332 KB

english, 2006

32

Mechanical Spikes from Nerve Terminals

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 42 KB

english, 2007

33

Steric Selectivity in Na Channels Arising from Protein Polarization and Mobile Side Chains

Boda, Dezső, Nonner, Wolfgang, Valiskó, Mónika, Henderson, Douglas, Eisenberg, Bob, Gillespie, Dirk

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 874 KB

english, 2007

34

Volume Exclusion in Calcium Selective Channels

Boda, Dezső, , Nonner, Wolfgang, Henderson, Douglas, Eisenberg, Bob, Gillespie, Dirk

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 1.79 MB

english, 2008

35

Permeation Properties of an Engineered Bacterial OmpF Porin Containing the EEEE-Locus of Ca2+ Channels

Miedema, Henk, Meter-Arkema, Anita, Wierenga, Jenny, Tang, John, Eisenberg, Bob, Nonner, Wolfgang, Hektor, Hans, Gillespie, Dirk, Meijberg, Wim

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 328 KB

english, 2004

36

Multiple Scales in the Simulation of Ion Channels and Proteins †

Journal:

The Journal of Physical Chemistry C

Year:

2010

Language:

english

File:

PDF, 179 KB

english, 2010

37

Interacting Ions in Biophysics: Real is not Ideal

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 393 KB

english, 2013

38

Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids

Eisenberg, Bob, Hyon, YunKyong, Liu, Chun

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 928 KB

english, 2010

39

Correlated Ions in a Calcium Channel Model: A Poisson–Fermi Theory

Liu, Jinn-Liang, Eisenberg, Bob

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 707 KB

english, 2013

40

Ion Permeation in the NanC Porin from Escherichia coli: Free Energy Calculations along Pathways Identified by Coarse-Grain Simulations

Dreyer, Jens, Strodel, Paul, Ippoliti, Emiliano, Finnerty, Justin, Eisenberg, Bob, Carloni, Paolo

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.29 MB

english, 2013

41

PNP Equations with Steric Effects: A Model of Ion Flow through Channels

Horng, Tzyy-Leng, Lin, Tai-Chia, Liu, Chun, Eisenberg, Bob

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 4.70 MB

english, 2012

42

An energetic variational approach to ion channel dynamics

Hyon, YunKyong, Eisenberg, Bob, Liu, Chun

Journal:

Mathematical Methods in the Applied Sciences

Year:

2014

Language:

english

File:

PDF, 601 KB

english, 2014

43

IONS IN FLUCTUATING CHANNELS: TRANSISTORS ALIVE

Journal:

Fluctuation and Noise Letters

Year:

2012

Language:

english

File:

PDF, 953 KB

english, 2012

44

A conservative finite difference scheme for Poisson–Nernst–Planck equations

Flavell, Allen, Machen, Michael, Eisenberg, Bob, Kabre, Julienne, Liu, Chun, Li, Xiaofan

Journal:

Journal of Computational Electronics

Year:

2014

Language:

english

File:

PDF, 1012 KB

english, 2014

45

Self-organized Models of Selectivity in Ca and Na Channels

Eisenberg, Bob, Boda, Dezso, Giri, Janhavi, Fonseca, James, Gillespie, Dirk, Henderson, Douglas, Nonner, Wolfgang

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 41 KB

english, 2009

46

Sialic Acid Transport in E. coli: Role of Outer Membrane Porin NanC

Giri, Janhavi, Tang, John M., Wirth, Christophe, Peneff, Caroline M., Schirmer, Tilman, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

47

Steric PNP (Poisson-Nernst-Planck): Ions in Channels

Eisenberg, Bob, Horng, Tzyy-Leng, Lin, Tai-Chia, Liu, Chun

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 66 KB

english, 2013

48

Single Channel Measurements of N-Acetylneuraminic Acid-Inducible Channel (NANC) in E. coli

Giri, Janhavi, Tang, John M., Wirth, Christophe, Peneff, Caroline M., Schirmer, Tilman, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 44 KB

english, 2011

49

Active Sites of Enzymes are Crowded with Charge

Jimenez-Morales, David, Liang, Jie, Eisenberg, Bob

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

50

Obituary

Jimenez-Morales, David, Liang, Jie, Eisenberg, Bob

Journal:

Year:

1974

Language:

english

File:

PDF, 305 KB

english, 1974

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